The following East Arnhem Region schools have limited programs.
| School | Limited program years for AIC |
|---|---|
| Alyangula Area School | 7 to 12 |
| Alyarrmandumanja Umbakumba School | All |
| Angurugu School | All |
| Baniyala Garrangali School | All |
| Dhupuma Barker | All |
| Gapuwiyak School | All |
| Gapuwiyak School - Gurrumala HLC / Donydji HLC | All |
| Gapuwiyak School - Ramingirr HLC | All |
| Gochan Jiny - Jirra HLC | All |
| Laynhapuy Homelands School | All |
| Laynhapuy Homelands School - Barrkira HLC | All |
| Laynhapuy Homelands School - Birany Birany HLC | All |
| Laynhapuy Homelands School - Dhalinybuy HLC | All |
| Laynhapuy Homelands School - Gangan HLC | All |
Laynhapuy Homelands School - Garrthalala Includes Makarrata senior Boarding facility | All |
| Laynhapuy Homelands School - Gurrumuru/Ninydjiya/Wandat | All |
| Laynhapuy Homelands School - Gutjangan/Bremer Island | All |
| Laynhapuy Homelands School - Rorruwuy/Gulnga | All |
| Laynhapuy Homelands School - Rurrangala/ Mandjawuy | All |
| Laynhapuy Homelands School - Wandawuy/Boruwuy or Wulwulwuy | All |
| Maningrida School | |
| Maningrida School - Ankabarrbirri | All |
| Maningrida School - Borlkdjam HLC | All |
| Maningrida School - Buluhkaduru HLC | All |
| Maningrida School - Gochan Jiny-Jirra | All |
| Maningrida School - Gamardi HLC | All |
| Maningrida School - Jimilawa HLC | All |
| Maningrida School - Ji-Marda HLC | All |
| Maningrida School - Malnjangarnak HLC | All |
| Maningrida School - Ngankalord HLC | All |
| Maningrida School - Marrkolidban HLC | All |
| Maningrida School - Mumeka HLC | All |
| Maningrida School - Wurdeja HLC | All |
| Maningrida School - Yikarrakkal HLC | All |
| Maningrida School - Yilan HLC | All |
| Milingimbi School | All |
| Milingimbi School - Gama-Guyurra HLC | All |
| Milingimbi School - Langarra HLC | All |
| Milingimbi School - Murrunga HLC | All |
| Milyakburra School | All |
| Numbulwar School - Rose River | All |
| Ramingining School | All |
| Shepherdson College | All |
| Shepherdson College - Mirrngatja HLC | All |
| Warruwi School | All |
| Yirrkala School | All |